td01_034692m

Annotations
This record is associated with the following annotations.
TermDefinition
GO:0047911Catalysis of the reaction: 1,4-alpha-D-galacturonide(n) + H2O = 1,4-alpha-D-galacturonide(n-1) + D-galacturonate. [EC:3.2.1.67, MetaCyc:GALACTURAN-14-ALPHA-GALACTURONIDASE-RXN]
GO:0010047The process leading to the spontaneous opening of the fruit permitting the escape of seeds. [GOC:tb, ISBN:0471245208]
GO:0007047
GO:0009505A more or less rigid stucture lying outside the cell membrane of a cell and composed of cellulose and pectin and other organic and inorganic substances. [ISBN:0471245208]
GO:0019863Interacting selectively and non-covalently with an immunoglobulin of the IgE isotype." [GOC:add, ISBN:0781735149 "Fundamental Immunology]
GO:0045490The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668]
GO:0046658Tethered to the plasma membrane by a covalently attached anchor, such as a lipid group, that is embedded in the membrane. When used to describe a protein, indicates that the peptide sequence does not span the membrane. [GOC:mah]
GO:0004650Catalysis of the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. [EC:3.2.1.15]
GO:0009901The dehiscence of an anther to release the pollen grains contained within it. [GOC:tb]
GO:0005975
INTERPRO:IPR000743Glycoside hydrolase, family 28
INTERPRO:IPR006626Parallel beta-helix repeat
INTERPRO:IPR011050Pectin lyase fold/virulence factor
INTERPRO:IPR012334Pectin lyase fold
KEGG_ORTHOLOGY:K01184E3.2.1.15; polygalacturonase [EC:3.2.1.15]
KEGG_PATHWAY:ko00010Glycolysis / Gluconeogenesis
Cross Reference
There are no cross references.
Homology
The following BLAST results are available for this feature:
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Analysis Date: 2011-06-28
Analysis Name: Blast vs ExPASy SwissProt of Tripalus databasica v1.0 transcripts
Total hits: 157
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 8.231e-102
Identity = 193/372 (51.88%), Postives = 259/372 (69.62%), Query Frame = 1
              Query:   82 ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKAL----YLKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYY-CGPNDECKN-QTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKIND--IDITHSDSGKDTRASCINAHGELYGRLVPSVDCL 1173 ++++ V QFGAVGDG TDDSQAFLKAW+++C    +    +VPAG TF+L P+ FQG CKS+ + VQ+ G +VAP    W G DK +W+LF+++ GL + G+G+I+G+      +     T+ KF  CNNL   GL H+DSP  HI +  CN V+IS+L+I APESSPNTDGID+  SSNV I+DC IATGDDC+AI + TSNI ++G+ CGPGHGISIGSLG +G T+ VE+V V++C F+GT NGARIKTWQGGSG+AR I+F  I L++ +NPIIIDQ+Y  G +D  K+ ++SAV+VS V +  F GTS +E  V   CSE V CT+I + D  I+   S SG+  +  C+N  G      VP ++CL
              Sbjct:   21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQ-FVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRG-ASTIAVPGLECL 389
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.460e-82
Identity = 158/382 (41.36%), Postives = 229/382 (59.95%), Query Frame = 1
              Query:   55 QPREAFPSYASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS-SAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKALY-------------LKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCINAHGELYGRLVP 1158 Q R   P     + V  FGA G+G TDD++AF  AWK+ C SK     +LVP   T LL P+   GPCK+  + +QI G I+AP+    W+G +++KWL F  ++ LTV G G ++G                  + A T+  F+ C N+    L  +DS   HI++  C  V+IS LK+IAP +SPNTDGI I+ S  + I + T++TGDDC++I  +++ I+++ +ICGPGHGISIGSLG +     V D+ V       T NG RIKTWQGGSG   +I F  IK+ +  NPIIIDQYYC     C NQTSA+ + ++S++  +GTS+++EA+++SCS+S  C +I + DID+  S+    T + C  A+G   G++ P
              Sbjct:   41 QSRSTRPRSERLLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTR-ILVPENYTCLLRPIDLSGPCKAR-LTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYP 420
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.670e-78
Identity = 160/361 (44.32%), Postives = 214/361 (59.28%), Query Frame = 1
              Query:   85 SSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHS-SAWDGHDKKKWLLFSNVNGLTVNGNGKIDG-------------KALYLKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCIN 1125 + +SV  FGA GDG TDD++AF KAWK  C S S    L+VP  K +LL  ++F GPCKS  + V+I+G I A    S W GH++K+W+ F +++ LT+ G G  +G             K+L  K A T+  F  C NL+   L   DS   H+S   C DV  SNL + APE SPNTDGI IT +  + + +  I TGDDC++I + +  +  T + CGPGHGISIGSLG     + V  V V       T NG RIKTWQGGSG A+ I F+ I + +  NPIIIDQYYC   D C  Q SAVKVS+V+Y+  +GTS++E AV+  CS+S  C    + +I++   + GK+T  SC N
              Sbjct:   83 TDISVDDFGARGDG-TDDTKAFEKAWKDACSSGS---VLIVPENKNYLLKQITFSGPCKSD-LRVKIRGTIEASSDQSDWVGHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLV-GNGGKETTMSCSN 437
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.563e-76
Identity = 162/380 (42.63%), Postives = 228/380 (60.00%), Query Frame = 1
              Query:   94 SVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGK-----ALYLKFAT-----------TSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCI--NAHGELYGRLVPSVDCLLP 1179 +V ++GAVGDG+ D ++AF  AW++ C  K  +  LLVP  K F++N + F GPC+      ++ G I+A + +     + + WL F+ + G T+ G G IDG+     A   K+             T+ KF     L+ +GL  ++SP  H+    C  V I  + I AP  SPNTDGIDI  S N  ++  TI TGDDCVAIGT +SNI +  +ICGPGHGISIGSLG     + V  VHV    F  T+NG RIKTWQGGSG A  I +E +++ +S+NPI+I+Q+YC     C+NQ SAV++ DV+Y   +GTS+T  A+QL CS+S+ C DIK++DI +  + SGK   ASC+  NA+G   G ++P+   L P
              Sbjct:   60 NVEKYGAVGDGKHDCTEAFSTAWQAAC--KKPSAMLLVPGNKKFVVNNLFFNGPCQPH-FTFKVDG-IIAAYQNPASWKNNRIWLQFAKLTGFTLMGKGVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLT-SGK--IASCLNDNANGYFSGHVIPACKNLSP 432
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.257e-75
Identity = 161/385 (41.82%), Postives = 225/385 (58.44%), Query Frame = 1
              Query:   82 ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVA-PHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKALYL----------------KFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCI--NAHGELYGRLVPSVDCLLP 1179 A+  +V Q+GAVGDG+ D ++AF   W + C  K  +  LLVPA K F +N + F+GPC+   ++ ++ G IVA P  + W   + K WL F+ +    + G G IDG+                    +   T+ K     ++  + L  ++SP  H+    C  V I  LKI AP  SPNTDGIDI  S    I  C I TGDDC+AIGT +SNI +  +ICGPGHGISIGSLG +   + V  VHV    F  T+NG RIKTWQGGSG A  I++E +++ +S+NPI+I+Q+YC     C+NQ SAV++  V+Y    GTS+T  A+QL CS+SV CT I+++++ +  + SGK   ASC+  NA G   GRL+P+   L P
              Sbjct:   56 ATVFNVEQYGAVGDGKHDSTEAFATTWNAAC--KKASAVLLVPANKKFFVNNLVFRGPCQPH-LSFKVDGTIVAQPDPARWK--NSKIWLQFAQLTDFNLMGTGVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLT-SGKP--ASCVDKNARGFYSGRLIPTCKNLRP 432
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.496e-74
Identity = 163/375 (43.47%), Postives = 220/375 (58.67%), Query Frame = 1
              Query:   82 ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTV--------NGNGK--------IDGKALYLKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCINAHGELYGRLVP 1158 AS+VSV  FGA GDG+TDD+QAF KAWK  C S +     LVP GKT+LL    F+GPCKS   N QI G + A    + D  DK  WL+  +VN L++        NGNGK        ID      K A T+   Y   NL  + L   ++    IS+  CN V +SN++I AP  SPNTDGI IT++ N+++ +  I TGDDC++I   T N+ +  + CGPGHGISIGSLG +   + V  ++V    F  + NG RIKT+QGGSG A+ I F+ I++E+  NPIIIDQ YC   D+C++Q SAV+V +V Y    GTS+T+ A+ L+CSE   C  I + ++ I      K   ASC NA+ +  G + P
              Sbjct:   65 ASTVSVSNFGAKGDGKTDDTQAFKKAWKKAC-STNGVTTFLVPKGKTYLLKSTRFRGPCKSLR-NFQILGTLSASTKRS-DYKDKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDKSKPCTK-APTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYC-DKDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKI------KGGTASCKNANVKNQGTVSP 428
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 5.560e-74
Identity = 154/361 (42.66%), Postives = 212/361 (58.73%), Query Frame = 1
              Query:   82 ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL------TVNGNGKI-------DGKALYLKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCIN 1125 + +V+V  FGA GDG  DD++AF KAWK+ C S S+A  LLVP  K +L+ P+SF GPCKS  + +QI G I A    +    D + WL+F +V  L      T+NGNGKI         KAL  K A T+  FY   +++ + L   ++   H+S   C +V  SNL + APE+SPNTDGI +T + N+ I  C I TGDDC++I   +  + V  + CGPGHGISIGSLG     + V DV V      GT NG RIKTWQGGSG A  I F+ +++ + +NPIIIDQ YC  +  C+ Q+SAV+V +V Y   +GT ++  A+   CS+   C  I + D+D+   + G   +A C N
              Sbjct:   87 SKTVNVDDFGAKGDGR-DDTKAFEKAWKAACSSTSSAV-LLVPK-KNYLVRPISFSGPCKSG-LTMQIYGTIEASDDRSDYRKDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDL-EIEGGAAAKALCNN 442
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 2.583e-71
Identity = 151/373 (40.48%), Postives = 220/373 (58.98%), Query Frame = 1
              Query:   85 SSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGN--GKIDG-------------KALYLKFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCINAHGELYGRLVP 1158 ++VSV  FGA GDG+TDD+QAF+ AWK  C S + A  LLVP G T+LL  +   GPC +S + VQI G + A    + D  D  KW++F  VN L+V+G   G +DG             KA     A T+  FY   +L+ + L   ++    IS+  C++V +SN+ + AP  SPNTDGI IT++ N+++ +  I TGDDC++I + + N+ +  + CGPGHGISIGSLG +   + V  V V      GT NG RIKT+QGGSG A  I F+ I++++  NPIIIDQ YC    +C  + SAV+V +V Y    GTS++E A+  +CS++  C  I ++ ++I      K  +A+C NA+    G ++P
              Sbjct:   66 TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS-NGAVNLLVPKGNTYLLKSIQLTGPC-NSILTVQIFGTLSASQKRS-DYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYC-DKSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNI------KGGKATCTNANVVDKGAVLP 428
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.405e-71
Identity = 153/379 (40.37%), Postives = 214/379 (56.46%), Query Frame = 1
              Query:   94 SVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVA-PHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKALYL----------------KFATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCINAHGELYGRLVPSVDCLLP 1179 +V  +GAVGDG+ D + AF K W + C   S     LVPA K F++N + F GPC+    + ++ G I A P  + W   + K W+ F+ +    + G G IDG+                    K   T+ K     ++  + L   +SP  H+    C+ V I  +KI AP  SPNTDGIDI  S   +I  CTI TGDDCVA+GT +SNI +  + CGPGHG+SIGSLG     S V  VH+    F  T+NG RIKTWQGGSG A  I++E +++ +++NPI+I+Q+YC     CKNQ SAVK+ DV++    GTS+T  A+QL CS+SV C++IK++++ +  + SGK       NA+G     L PS   L P
              Sbjct:   61 NVEHYGAVGDGKHDSTDAFEKTWNAACNKLSAV--FLVPANKKFVVNNLVFYGPCQPH-FSFKVDGTIAAYPDPAKWK--NSKIWMHFARLTDFNLMGTGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLT-SGKVATCVNKNANGYYTNPLNPSCKSLHP 433
            
BLAST of td01_034692m vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 7.514e-71
Identity = 157/374 (41.98%), Postives = 213/374 (56.95%), Query Frame = 1
              Query:   82 ASSVSVIQFGAVGDGETDDSQAFLKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGL------TVNGNGKIDGK-ALYLK-------FATTSTKFYCCNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCG-PNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTDIKINDIDITHSDSGKDTRASCINAHGELYGRLVP 1158 A ++SV  FGA G+G  DD+QAF+KAWK+ C S S A  L+VP  K +L+ P+ F GPCKS  + +QI G I A    +    D   WL+F NV  L      T+NGNG I  K +  +K       +A T+  F  CNNLV + L   D+   H+    C +V  S L + APE SPNTDGI +T++ N+ I    I TGDDC++I + +  +  T + CGPGHGISIGSLG +G    V  V V      GT NG RIKTW+GGSG A  I F+ +++    NPIIIDQ YC     +CK Q SAV+V +V Y   +GTS++ +A+ L+CS+SV C  I +  + +      ++ RA C N      G + P
              Sbjct:   96 AKTISVDDFGAKGNG-ADDTQAFVKAWKAACSS-SGAMVLVVPQ-KNYLVRPIEFSGPCKSQ-LTLQIYGTIEASEDRSIY-KDIDHWLIFDNVQNLLVVGPGTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL------QNGRAECNNVQPAYKGVVSP 458
            
Match NameStatsDescription
PGLR3_ARATHE-Value: 8.231e-102, PID: 51.88Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR5_ARATHE-Value: 1.460e-82, PID: 41.36Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_PERAEE-Value: 1.670e-78, PID: 44.32Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR2_CRYJAE-Value: 1.563e-76, PID: 42.63Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR2_CHAOBE-Value: 2.257e-75, PID: 41.82Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
ADPG1_ARATHE-Value: 2.496e-74, PID: 43.47Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_ACTDEE-Value: 5.560e-74, PID: 42.66Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
ADPG2_ARATHE-Value: 2.583e-71, PID: 40.48Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR2_JUNASE-Value: 4.405e-71, PID: 40.37Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR_MALDOE-Value: 7.514e-71, PID: 41.98Polygalacturonase OS=Malus domestica PE=2 SV=1[more]

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InterPro Analysis
InterPro results: 
The following InterPro results are available for this feature:
Analysis Name: InterProScan analysis of Tripalus databasica v1.0 transcripts
Date Performed: 2011-06-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 66..377
score: 3.8
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 231..244
score
IPR006626Parallel beta-helix repeatSMARTSM00710no descriptioncoord: 174..200
score: 5.5e+02coord: 201..222
score: 3.3coord: 224..244
score: 2.3e+03coord: 254..275
score: 18coord: 350..378
score: 1.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 12..390
score: 2.7e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 23..390
score: 1.7e
NoneNo IPR availableSEGsegsegcoord: 2..9
score
NoneNo IPR availableSIGNALPSignalP-NN(euk)signal-peptidecoord: 1..18
score

Location on Map
MapPositionMap Description
This are no positions on any maps.
Properties
TdID
td19278758
Publication
Relationship
Relationship
The mRNA, td01_034692m, is a part of the gene, td01_034692m.g.
The polypeptide, td01_034692m, derives from the mRNA, td01_034692m.
Sequences
Sequence Coordinates
Chr1:188539..190480-
Sequence
GAACTTTTAATCATAATCTTGATTTTGTCCATGGCAATCTGGGGATCAAG
TTTCCAACCCCGTGAGGCATTTCCTTCTTATGCTTCGTCTGTCAGTGTGA
TCCAGTTTGGAGCTGTAGGAGATGGAGAAACAGATGATTCACAAGCTTTC
CTAAAAGCTTGGAAAAGTATTTGTGGATCAAAATCAAATGCTCCACCGCT
ACTTGTACCGGCTGGCAAAACGTTCCTTTTGAATCCTGTTAGCTTTCAAG
GTCCATGCAAGTCCTCTTCCATCAATGTTCAGATTCAAGGAAACATCGTG
GCTCCCCACAGTAGTGCCTGGGATGGTCATGATAAGAAGAAATGGCTCCT
TTTTTCTAATGTGAATGGCCTTACAGTTAACGGAAATGGAAAAATCGATG
GAAAAGCTCTGTATTTAAAATTTGCCACTACTAGTACTAAATTTTATTGC
TGCAATAACCTTGTATTCCGTGGATTGATGCATGTCGACAGCCCGGGCAA
CCATATCAGTGTATACGGCTGCAACGATGTATCCATCTCTAATCTCAAAA
TAATTGCGCCAGAATCAAGCCCTAACACTGATGGCATTGATATTACTCAC
TCGAGCAATGTTCAAATACGCGACTGCACCATTGCAACCGGAGATGATTG
TGTTGCCATTGGTACAGACACCTCAAACATTGCTGTCACTGGTGTGATAT
GTGGACCTGGTCATGGCATAAGTATTGGAAGTTTAGGAGCAAATGGAGGG
ACAAGTATTGTAGAAGATGTACATGTAAGAGATTGTACTTTCAAAGGAAC
TAAAAATGGAGCGAGGATTAAAACATGGCAGGGAGGGTCCGGACATGCCA
GAAGGATTTCTTTTGAGAGAATTAAATTAGAGTCATCTGACAACCCAATT
ATCATAGACCAATATTATTGCGGCCCTAACGATGAGTGCAAAAATCAGAC
ATCTGCAGTTAAGGTGAGCGACGTTTCCTACATTGGATTTCAAGGTACTT
CAAGCACAGAAGAAGCAGTTCAGTTAAGCTGCAGTGAAAGCGTTGGTTGC
ACTGATATTAAGATTAATGACATCGACATAACACATTCAGATTCAGGAAA
AGATACTCGTGCCTCCTGCATCAATGCTCATGGAGAATTATATGGTCGAT
TAGTTCCATCCGTAGATTGTCTTTTACCATAA
Sequence Length
1182
Protein Sequence
ELLIIILILSMAIWGSSFQPREAFPSYASSVSVIQFGAVGDGETDDSQAF
LKAWKSICGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIV
APHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKALYLKFATTSTKFYC
CNNLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITH
SSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGG
TSIVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPI
IIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGC
TDIKINDIDITHSDSGKDTRASCINAHGELYGRLVPSVDCLLP*
Summary
Resource Type
mRNA
Organism
Name
td01_034692m
Identifier
td19278758